Proteomic analysis of the organic matrix of the abalone Haliotis asinina calcified shell
Identifieur interne : 006E97 ( Main/Exploration ); précédent : 006E96; suivant : 006E98Proteomic analysis of the organic matrix of the abalone Haliotis asinina calcified shell
Auteurs : Benjamin Marie [France] ; Arul Marie [France] ; Daniel J. Jackson [Allemagne] ; Lionel Dubost [France] ; Bernard M. Degnan [Australie] ; Christian Milet [France] ; Frédéric Marin [France]Source :
- Proteome Science [ 1477-5956 ] ; 2010.
Abstract
The formation of the molluscan shell is regulated to a large extent by a matrix of extracellular macromolecules that are secreted by the shell forming tissue, the mantle. This so called "calcifying matrix" is a complex mixture of proteins and glycoproteins that is assembled and occluded within the mineral phase during the calcification process. While the importance of the calcifying matrix to shell formation has long been appreciated, most of its protein components remain uncharacterised.
Recent expressed sequence tag (EST) investigations of the mantle tissue from the tropical abalone (
This is one of the first comprehensive proteomic study of a molluscan shell, and should provide a platform for further characterization of matrix protein functions and interactions.
Url:
DOI: 10.1186/1477-5956-8-54
PubMed: 21050442
PubMed Central: 2989941
Affiliations:
- Allemagne, Australie, France
- Basse-Saxe, Bourgogne, Bourgogne-Franche-Comté, Région Bourgogne, Île-de-France
- Dijon, Göttingen, Paris
- Université de Bourgogne
Links toward previous steps (curation, corpus...)
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- to stream Pmc, to step Checkpoint: 002492
- to stream Ncbi, to step Merge: 000914
- to stream Ncbi, to step Curation: 000914
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Le document en format XML
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Jackson</name><affiliation wicri:level="3"><nlm:aff id="I3">Courant Research Center Geobiology, Georg-August-University of Göttingen, 37077 Göttingen, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Courant Research Center Geobiology, Georg-August-University of Göttingen, 37077 Göttingen</wicri:regionArea><placeName><region type="land" nuts="2">Basse-Saxe</region><settlement type="city">Göttingen</settlement></placeName></affiliation></author><author><name sortKey="Dubost, Lionel" sort="Dubost, Lionel" uniqKey="Dubost L" first="Lionel" last="Dubost">Lionel Dubost</name><affiliation wicri:level="1"><nlm:aff id="I2">Département RDDM, Plateforme de Spectrométrie de Masse et de Protéomique/FRE3206 CNRS, Molécules de Communication et Adaptations des Micro-organismes, M.N.H.N, 75005 Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Département RDDM, Plateforme de Spectrométrie de Masse et de Protéomique/FRE3206 CNRS, Molécules de Communication et Adaptations des Micro-organismes, M.N.H.N, 75005 Paris</wicri:regionArea><wicri:noRegion>75005 Paris</wicri:noRegion><placeName><settlement type="city">Paris</settlement><region type="région" nuts="2">Île-de-France</region></placeName></affiliation></author><author><name sortKey="Degnan, Bernard M" sort="Degnan, Bernard M" uniqKey="Degnan B" first="Bernard M" last="Degnan">Bernard M. Degnan</name><affiliation wicri:level="1"><nlm:aff id="I4">School of Biological Sciences, University of Queensland, 4072 Queensland, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>School of Biological Sciences, University of Queensland, 4072 Queensland</wicri:regionArea><wicri:noRegion>4072 Queensland</wicri:noRegion></affiliation></author><author><name sortKey="Milet, Christian" sort="Milet, Christian" uniqKey="Milet C" first="Christian" last="Milet">Christian Milet</name><affiliation wicri:level="1"><nlm:aff id="I5">UMR 7208 BOREA, M.N.H.N., 75005 Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>UMR 7208 BOREA, M.N.H.N., 75005 Paris</wicri:regionArea><wicri:noRegion>75005 Paris</wicri:noRegion><placeName><settlement type="city">Paris</settlement><region type="région" nuts="2">Île-de-France</region></placeName></affiliation></author><author><name sortKey="Marin, Frederic" sort="Marin, Frederic" uniqKey="Marin F" first="Frédéric" last="Marin">Frédéric Marin</name><affiliation wicri:level="4"><nlm:aff id="I1">UMR 5561 CNRS, Biogéosciences, Université de Bourgogne, 21000 Dijon, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>UMR 5561 CNRS, Biogéosciences, Université de Bourgogne, 21000 Dijon</wicri:regionArea><wicri:noRegion>21000 Dijon</wicri:noRegion><orgName type="university">Université de Bourgogne</orgName><placeName><settlement type="city">Dijon</settlement><region type="region" nuts="2">Région Bourgogne</region></placeName></affiliation></author></analytic><series><title level="j">Proteome Science</title><idno type="eISSN">1477-5956</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>The formation of the molluscan shell is regulated to a large extent by a matrix of extracellular macromolecules that are secreted by the shell forming tissue, the mantle. This so called "calcifying matrix" is a complex mixture of proteins and glycoproteins that is assembled and occluded within the mineral phase during the calcification process. While the importance of the calcifying matrix to shell formation has long been appreciated, most of its protein components remain uncharacterised.</p></sec><sec><title>Results</title><p>Recent expressed sequence tag (EST) investigations of the mantle tissue from the tropical abalone (<italic>Haliotis asinina</italic>) provide an opportunity to further characterise the proteins in the shell by a proteomic approach. In this study, we have identified a total of 14 proteins from distinct calcified layers of the shell. Only two of these proteins have been previously characterised from abalone shells. Among the novel proteins are several glutamine- and methionine-rich motifs and hydrophobic glycine-, alanine- and acidic aspartate-rich domains. In addition, two of the new proteins contained Kunitz-like and WAP (whey acidic protein) protease inhibitor domains.</p></sec><sec><title>Conclusion</title><p>This is one of the first comprehensive proteomic study of a molluscan shell, and should provide a platform for further characterization of matrix protein functions and interactions.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Addadi, L" uniqKey="Addadi L">L Addadi</name></author><author><name sortKey="Joester, D" uniqKey="Joester D">D Joester</name></author><author><name sortKey="Nudelman, F" uniqKey="Nudelman F">F Nudelman</name></author><author><name sortKey="Weiner, S" uniqKey="Weiner S">S Weiner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shen, X" uniqKey="Shen X">X Shen</name></author><author><name sortKey="Belcher, Am" uniqKey="Belcher A">AM Belcher</name></author><author><name sortKey="Hansma, Pk" uniqKey="Hansma P">PK 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Ka" uniqKey="Bolton K">KA Bolton</name></author><author><name sortKey="Van Der Meer, Gj" uniqKey="Van Der Meer G">GJ Van Der Meer</name></author><author><name sortKey="Apostolopoulos, J" uniqKey="Apostolopoulos J">J Apostolopoulos</name></author><author><name sortKey="Kirkland, Ma" uniqKey="Kirkland M">MA Kirkland</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ganss, B" uniqKey="Ganss B">B Ganss</name></author><author><name sortKey="Hoffmann, W" uniqKey="Hoffmann W">W Hoffmann</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shashoua, Ve" uniqKey="Shashoua V">VE Shashoua</name></author><author><name sortKey="Hesse, Gw" uniqKey="Hesse G">GW Hesse</name></author><author><name sortKey="Milinazzo, B" uniqKey="Milinazzo B">B Milinazzo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Esles, Ja" uniqKey="Esles J">JA Esles</name></author><author><name sortKey="Lindberg, Dr" uniqKey="Lindberg D">DR Lindberg</name></author><author><name sortKey="Wray, C" uniqKey="Wray C">C Wray</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Takeuchi, T" uniqKey="Takeuchi T">T Takeuchi</name></author><author><name sortKey="Endo, K" uniqKey="Endo K">K Endo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Miyazaki, Y" uniqKey="Miyazaki Y">Y Miyazaki</name></author><author><name sortKey="Usui, T" uniqKey="Usui T">T Usui</name></author><author><name sortKey="Kajikawa, A" uniqKey="Kajikawa A">A Kajikawa</name></author><author><name sortKey="Hishiyama, H" uniqKey="Hishiyama H">H Hishiyama</name></author><author><name sortKey="Matsuzawa, N" uniqKey="Matsuzawa N">N Matsuzawa</name></author><author><name sortKey="Nishida, T" uniqKey="Nishida T">T Nishida</name></author><author><name sortKey="Machii, A" uniqKey="Machii A">A Machii</name></author><author><name sortKey="Samata, T" uniqKey="Samata T">T Samata</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Miyazaki, Yn" uniqKey="Miyazaki Y">YN Miyazaki</name></author><author><name sortKey="Nishida, T" uniqKey="Nishida T">T Nishida</name></author><author><name sortKey="Aoki, H" uniqKey="Aoki H">H Aoki</name></author><author><name sortKey="Samata, T" uniqKey="Samata T">T Samata</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mann, K" uniqKey="Mann K">K Mann</name></author><author><name sortKey="Wilt, F" uniqKey="Wilt F">F Wilt</name></author><author><name sortKey="Poustka, Aj" uniqKey="Poustka A">AJ Poustka</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Allemagne</li><li>Australie</li><li>France</li></country><region><li>Basse-Saxe</li><li>Bourgogne</li><li>Bourgogne-Franche-Comté</li><li>Région Bourgogne</li><li>Île-de-France</li></region><settlement><li>Dijon</li><li>Göttingen</li><li>Paris</li></settlement><orgName><li>Université de Bourgogne</li></orgName></list><tree><country name="France"><region name="Bourgogne-Franche-Comté"><name sortKey="Marie, Benjamin" sort="Marie, Benjamin" uniqKey="Marie B" first="Benjamin" last="Marie">Benjamin Marie</name></region><name sortKey="Dubost, Lionel" sort="Dubost, Lionel" uniqKey="Dubost L" first="Lionel" last="Dubost">Lionel Dubost</name><name sortKey="Marie, Arul" sort="Marie, Arul" uniqKey="Marie A" first="Arul" last="Marie">Arul Marie</name><name sortKey="Marin, Frederic" sort="Marin, Frederic" uniqKey="Marin F" first="Frédéric" last="Marin">Frédéric Marin</name><name sortKey="Milet, Christian" sort="Milet, Christian" uniqKey="Milet C" first="Christian" last="Milet">Christian Milet</name></country><country name="Allemagne"><region name="Basse-Saxe"><name sortKey="Jackson, Daniel J" sort="Jackson, Daniel J" uniqKey="Jackson D" first="Daniel J" last="Jackson">Daniel J. Jackson</name></region></country><country name="Australie"><noRegion><name sortKey="Degnan, Bernard M" sort="Degnan, Bernard M" uniqKey="Degnan B" first="Bernard M" last="Degnan">Bernard M. Degnan</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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